geniekit Python 0.1.0
Harmonizes six GENIE BPC clinicogenomic cohorts, derives lines of therapy, and produces aggregate summaries with disclosure controls. Includes metadata and synthetic-data tools.
Open source / Python · Rust · TypeScript · JavaScript
Related packages, language ports, papers, demos, and installation links are grouped on this page.
Registry sync /
The newest releases across the public package profile, with direct links to install details and source.
Harmonizes six GENIE BPC clinicogenomic cohorts, derives lines of therapy, and produces aggregate summaries with disclosure controls. Includes metadata and synthetic-data tools.
Adds optional Codex CLI integration with bounded task execution, recorded usage, duplicate refusal, and strict replay.
Native ports with persistent stores, shared budgets, streaming, and replay. Each follows its own version line and targets Python Pollard 1.6.0 behavior.
Major software
Each section describes the project and lists its implementations, papers, demos, and package releases.
Created by Muntaser Syed, JSON-LD Ex is an AI/ML extension framework for representing confidence, provenance, temporal validity, embeddings, privacy rights, validation, and context integrity while preserving compatibility with linked-data workflows.
pip install jsonld-exThe full reference implementation, including Subjective Logic, FHIR interoperability, security hardening, temporal operations, and AI/ML metadata.
A feature-complete JavaScript/TypeScript implementation with built-in type declarations and an MCP server.
The formal gap analysis and extension proposal behind the framework.
A two-layer toolkit for measuring LLM context budgets, estimating exhaustion, choosing compaction or handoff actions, and rendering a live context gauge.
pip install tokenmaster ctxmasterNormalized token accounting, effective-budget gauges, turns-to-exhaustion prediction, and compaction/handoff policies.
Terminal gauges and renderers that present context-budget telemetry.
Language-parity implementations and a unified handoff-fidelity protocol are developed together.
A balanced rope with polynomial-hash metadata for logarithmic concatenation, splitting, substring hashing, comparison, and compact repetition encoding.
pip install hashropeParallel implementations of the BB[2/7] hash-augmented tree for efficient text and state operations. Rust 0.3.2 adds an optional arbitrary-precision API for Python-compatible hash profiles.
Genomic region comparison, mutation localization, tandem-repeat analysis, and drug-resistance screening.
Experiments for the accepted IEEE ICTAI 2026 paper on persistent editing, branching, prefix identification, and repetition encoding for LLM context management.
Packages for representing belief, tracking validity over time, and updating confidence through chains of evidence or agents.
pip install chronofy trustandverify xrag-temporalThe reference implementation of the Temporal-Logical Decay Architecture: temporal embeddings, decay-weighted retrieval, STL knowledge-validity checks, and data re-acquisition triggers for time-aware RAG. The paper is published in the IEEE IRI 2026 proceedings.
Subjective-Logic confidence algebra and a Jac/Jaseci agent walker for verifiable knowledge workflows.
Time-decayed uncertainty and evidence confidence for retrieval systems.
Air-gapped neuro-symbolic cognition over verified edge state, with Subjective Logic guardrails for LLM-driven IoT actuation. The paper is published in the IEEE IRI 2026 proceedings.
Pollard provides governed and replayable execution trees for agents. Its companions add typed robotics decisions and provider-drift monitoring; MCP-Edge connects constrained devices. The Station Steward hackathon project combines Pollard and MCP-Edge with Chronofy, Arduino telemetry, and human task handoffs.
pip install pollard mcp-edgepip install pollard-jev epicormicA runtime for budgeting agent work, enforcing versioned action gates, auditing execution trees, and replaying decisions. Python 1.6.2 adds optional Codex CLI integration with bounded task execution, recorded usage, duplicate refusal, and strict replay. Agent teams retain inherited budgets, permissions, checkpoints, and durable approvals.
A native Node.js/TypeScript runtime with streaming, replay, persistent stores, shared budgets, provider adapters, and audit tools. Its independent release line targets Python Pollard 1.6.0 behavior.
A native Rust runtime with eight storage backends, shared budgets, async streaming, replay, and audit tools. Its independent release line targets Python Pollard 1.6.0 behavior.
A Pollard companion for typed robotics and IoT decisions, with observation-validity checks, bounded simulated actions, audit records, and reproducible local OpenJev benchmarks.
Statistical provider-drift monitoring for Pollard-governed AI systems, with reproducible evidence records and controls that gate subsequent model and tool calls. Its verdicts distinguish stable, warning, drift, and unknown states.
A bridging gateway, MCP-Lite server, and four-tier taxonomy for extending the Model Context Protocol to constrained devices.
An interactive talk and security lab covering MCP, autonomous agents, AI pipelines, attack surfaces, and defensive patterns.
A reasoning-carrying binary linked-data protocol for constrained IoT networks. It combines compact CBOR-LD documents with bit-packed Subjective Logic annotations while preserving on-wire semantics.
pip install cbor-ld-excargo add cborld-exThe full protocol implementation: CBOR Tag 60000 annotations, constrained opinion quantization, temporal decay, cumulative fusion, MQTT and CoAP transport, security metadata, provenance chains, streaming, and batch compression.
A byte-compatible implementation for embedded, bare-metal, WASM, and ESP32 targets. Its feature tiers support full standard-library use, allocator-only environments, digest verification, or a heap-free core wire format.
Tier 1 sensors add a 4-byte opinion; Tier 2 gateways fuse and temporally decay evidence; Tier 3 services append tamper-evident provenance. Across four real IoT datasets, the accepted study reports 4.1× compression over JSON-LD for Intel telemetry and 100% IEEE 802.15.4 frame fit while retaining self-description.
CDXF provides universal binary interchange across JSON, YAML, XML, and TOML; its paper is accepted at IEEE ComComAp 2026. UHC hashes directly over LZ77 streams for compressed-domain processing.
Reusable research frameworks for understanding model decisions, constructing speech corpora, harmonizing clinicogenomic cohorts, measuring energy, and building efficient edge architectures.
Python tools for harmonizing six GENIE BPC clinicogenomic cohorts, deriving lines of therapy, and producing aggregate summaries with disclosure controls. Includes metadata and synthetic-data tools.
A unified explainability framework with an audited registry of methods and capabilities.
A language-agnostic generator and evaluator for speech corpora with maximal phoneme coverage. Its paper is published in the Interspeech 2026 proceedings, pp. 5916–5917.
Physics-grounded energy metrics paired with a causal, dual-rate sequence backbone for streaming sensor policies.
Reproducible transistor-level energy analysis for 37 signal-processing algorithms on RTX 4090 and A100 GPUs, including data and profiler traces.
Focused packages for machine-learning environment repair, multi-spectral codes, and neural data embedding.
A hardware-aware agent that diagnoses and repairs incompatible Python machine-learning stacks.
RGB channel multiplexing for three independent QR payloads, with neural-assisted decoding and a palette mode supporting up to nine layers. Its paper was accepted in ICMLA 2026 Special Session 1.
Published model checkpoints for RGB and palette modes, plus RGB and palette-6 datasets.
Neural private-payload embedding in standard-decodable QR codes, with a bundled model, error correction, and interleaved bit placement. Decode images created with 0.1.0 using --placement native. The robust operating point has a visible color tint.
Live materials
These companion sites demonstrate the software and provide material from technical talks.
Browse the Explainiverse framework and its model-explanation methods.
Read about the JSON-LD 1.2 extension framework and its FLAIRS-39 paper.
Test security, validation, Subjective Logic, resource limits, and agent integrations.
Interactive material from the AgentCon Miami talk on securing MCP, agents, and AI pipelines.
View unified hash compression and hash-rope structures.
Lecture notebooks, workshop repositories, and public teaching materials for agentic AI and MCP.
Registry profiles
Use these profiles for current versions, release history, and installation files.